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BioInformatics
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Nucleotide and protein sequence alignment (BLAST, ClustalW)
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Phylogenetic tree construction
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Protein structure prediction (Swiss-Model, Alpha Fold)
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Molecular docking and simulation
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QSAR modeling
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ADME and toxicity prediction
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Pharmacophore modeling
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Genome annotation and comparison
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Transcriptome and gene expression analysis
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Metagenomic and microbiome data analysis
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SNP detection and analysis
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Gene ontology and pathway enrichment (KEGG, GO)
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Epitope prediction (B-cell and T-cell)
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CRISPR target prediction and off-target analysis
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RNA-seq and differential gene expression analysis
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RNA secondary structure prediction
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Drug repurposing via in silico screening
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Network biology (e.g., STRING database)
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Integration of multi-omics data
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Machine learning in bioinformatics
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