BioInformatics

Nucleotide and protein sequence alignment (BLAST, ClustalW)

Phylogenetic tree construction

Protein structure prediction (Swiss-Model, Alpha Fold)

Molecular docking and simulation

QSAR modeling

ADME and toxicity prediction 

Pharmacophore modeling

Genome annotation and comparison

Transcriptome and gene expression analysis

Metagenomic and microbiome data analysis

SNP detection and analysis

Gene ontology and pathway enrichment (KEGG, GO)

Epitope prediction (B-cell and T-cell)

CRISPR target prediction and off-target analysis

RNA-seq and differential gene expression analysis

RNA secondary structure prediction

Drug repurposing via in silico screening

Network biology (e.g., STRING database)

Integration of multi-omics data

Machine learning in bioinformatics